Gene | Akr1d1 |
Chromosome | 6 |
Deletion Start | 37,530,248 |
Deletion End | 37,558,531 |
Deletion Size | 28,284 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 37,530,763 | 37,530,787 | ATGGTTGTTTCCCTGAGTTGCTTTG |
TUP | 37,530,790 | 37,530,817 | CCTGTGGTAATGCTGACTCTCAAGGTGG |
TUR | 37,530,819 | 37,530,840 | CCCTTGTTGCTTCACGATGTTC |
TDF | 37,557,545 | 37,557,568 | TGACATCGTCATTGTCGCACATAG |
TDP | 37,557,570 | 37,557,591 | CCCTTAGGGACCTGCCGCAACC |
TDR | 37,557,631 | 37,557,652 | TTTCTGCCCTGTCCTCATAGAG |
PCR Primers
Primer | Sequence |
SU | TGCCTAGAGTTTTCAGAGAGATTG |
SD | GAGCAGTGGAAACAGCCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12494A-B10 | VGB6 | C57BL/6NTac | |
12494A-D1 | VGB6 | C57BL/6NTac | |
12494A-F11 | VGB6 | C57BL/6NTac | |