Gene | Apln |
Chromosome | X |
Deletion Start | 48,034,502 |
Deletion End | 48,028,230 |
Deletion Size | 6,273 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,033,932 | 48,033,952 | GGGCTCAAGCTACTGGAGATG |
TUP | 48,033,902 | 48,033,930 | TGTGCCAACATGTAGACGTGACACTTGTT |
TUR | 48,033,881 | 48,033,900 | GCAGCGTGCTCCTGACTATG |
TDF | 48,028,442 | 48,028,463 | CCACTGATGTTGCCTCCAGATG |
TDP | 48,028,413 | 48,028,440 | AACAGGACTAGAAGAAGGAAGCATGCGC |
TDR | 48,028,386 | 48,028,406 | CCTCGAAGTTCTGGGCTTCAC |
PCR Primers
Primer | Sequence |
SU | CACATGACCAAGTGGGCTC |
SD | AAGCTCTCCTGCTCCCTACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12542A-C1 | VGB6 | C57BL/6NTac | |
12542A-C8 | VGB6 | C57BL/6NTac | |
12542A-D3 | VGB6 | C57BL/6NTac | |
12542A-F10 | VGB6 | C57BL/6NTac | |
12542A-G11 | VGB6 | C57BL/6NTac | |