Gene | C1qtnf9 |
Chromosome | 14 |
Deletion Start | 60,772,300 |
Deletion End | 60,780,024 |
Deletion Size | 7,725 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 14
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 60,772,434 | 60,772,453 | TGGTGCCAAGGGTGACAAAG |
TUP | 60,772,455 | 60,772,480 | AGACGCAGGTACTTGACACTTGCTGC |
TUR | 60,772,494 | 60,772,516 | GTGGGTGACTGAAGGGATAGAAG |
TDF | 60,779,841 | 60,779,862 | CCTGCACACCAAGGACAGTTAC |
TDP | 60,779,864 | 60,779,886 | TGAGCTCTGAGGACCAGGCGTCT |
TDR | 60,779,920 | 60,779,940 | TGTCACCTGCATCCACACTTC |
PCR Primers
Primer | Sequence |
SU | CTTCTTCTAGTCCAGGTTGG |
SD | CTGTAGGACTAACTTCCCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12588A-C6 | VGB6 | C57BL/6NTac | |
12588A-C12 | VGB6 | C57BL/6NTac | |
12588A-E11 | VGB6 | C57BL/6NTac | |
12588A-H11 | VGB6 | C57BL/6NTac | |
12588A-G1 | VGB6 | C57BL/6NTac | |