Gene | Cdcp1 |
Chromosome | 9 |
Deletion Start | 123,190,119 |
Deletion End | 123,173,432 |
Deletion Size | 16,688 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 123,189,759 | 123,189,779 | CAGCTCCCTAAGATGGCTCTC |
TUP | 123,189,721 | 123,189,741 | CCGGCCCATGTGCTTCCCAGA |
TUR | 123,189,703 | 123,189,720 | TCTGGTCTGCCTGGGTTC |
TDF | 123,173,938 | 123,173,959 | TCCTCATTCTGTTGTGCCATTC |
TDP | 123,173,906 | 123,173,934 | ACAAACAGGAAGAAGGTGGATAAGGGTCC |
TDR | 123,173,810 | 123,173,832 | GCATACACATGGGAGTCATTGTC |
PCR Primers
Primer | Sequence |
SU | CTGATTTCCTACTCCCACTC |
SD | GTGAGAGCAGAGACCTCAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 150 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12591B-B10 | VGB6 | C57BL/6NTac | |
12591D-B3 | VGB6 | C57BL/6NTac | |
12591D-B9 | VGB6 | C57BL/6NTac | |