Gene | Fam198b |
Chromosome | 3 |
Deletion Start | 79,886,230 |
Deletion End | 79,908,799 |
Deletion Size | 22,570 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 79,886,504 | 79,886,522 | CAGAGTTGCAGGGCAATGG |
TUP | 79,886,523 | 79,886,546 | AAGCACTTTGCAGCCCAACGTGGT |
TUR | 79,886,562 | 79,886,580 | AGGCTTGCTGCGCTTGGAG |
TDF | 79,908,593 | 79,908,612 | CCGACCTCGCCCTATCATTC |
TDP | 79,908,613 | 79,908,639 | TCTGGGACTCATCTCTAGCATCTGCAA |
TDR | 79,908,701 | 79,908,719 | GCCATTCAGCCAGCACTTC |
PCR Primers
Primer | Sequence |
SU | GAAGGAAAGGGTTACTCGCC |
SD | AGACGGTGACTAAGCTAGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 127 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12638A-B2 | VGB6 | C57BL/6NTac | |
12638A-C10 | VGB6 | C57BL/6NTac | |
12638A-C4 | VGB6 | C57BL/6NTac | |
12638A-H10 | VGB6 | C57BL/6NTac | |