Gene | Rab3il1 |
Chromosome | 19 |
Deletion Start | 10,018,352 |
Deletion End | 10,034,569 |
Deletion Size | 16,218 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 10,018,882 | 10,018,903 | CCCTCATCCTCACTTCCATCTG |
TUP | 10,018,905 | 10,018,929 | TAGGGCCATCGGTTCTTGAAGCTGA |
TUR | 10,018,960 | 10,018,978 | GTGAACAGGGAGCAAGGTC |
TDF | 10,033,715 | 10,033,734 | GGGTCACACCCTCTCCATTC |
TDP | 10,033,735 | 10,033,758 | TGCCCACAGATCACCGCAGTATGC |
TDR | 10,033,789 | 10,033,808 | TCCTGCCGAACCAGACCTTG |
PCR Primers
Primer | Sequence |
SU | CCGAGAGCCATTGTAGGTTC |
SD | TTGGAGACATTTGCCCTACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12658A-D5 | VGB6 | C57BL/6NTac | |
12658A-H8 | VGB6 | C57BL/6NTac | |
12658A-E9 | VGB6 | C57BL/6NTac | |
12658A-B2 | VGB6 | C57BL/6NTac | |