Gene | AU023871 |
Chromosome | 17 |
Deletion Start | 35,066,167 |
Deletion End | 35,064,316 |
Deletion Size | 1,852 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 35,065,602 | 35,065,623 | CGCACAGTGCTTCAAGTGTTAG |
TUP | 35,065,579 | 35,065,598 | ACAAGGCAGGTTGCCGGCCT |
TUR | 35,065,544 | 35,065,562 | CATCTGGGCCTCGACCTAC |
TDF | 35,064,873 | 35,064,895 | AACTGCACTCAATTTCCCTATCC |
TDP | 35,064,849 | 35,064,871 | ACCCGCACAATCCCTAACCCTGA |
TDR | 35,064,825 | 35,064,845 | TCGCAAGGACTCAGACTCAAG |
PCR Primers
Primer | Sequence |
SU | CCATGGTAGTTGTTCGCAA |
SD | AGCAGCCAATGAGCAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12687A-A5 | VGB6 | C57BL/6NTac | |
12687A-B1 | VGB6 | C57BL/6NTac | |
12687A-C5 | VGB6 | C57BL/6NTac | |
12687A-A10 | VGB6 | C57BL/6NTac | |