12687   AU023871     Status: ES cell colonies screened / QC positives

GeneAU023871
Chromosome17
Deletion Start35,066,167
Deletion End35,064,316
Deletion Size1,852
Genome Build38
MGI IDMGI:2146995
NCBI Gene ID106722
BAC ID260I21
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 17

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF35,065,60235,065,623CGCACAGTGCTTCAAGTGTTAG
TUP35,065,57935,065,598ACAAGGCAGGTTGCCGGCCT
TUR35,065,54435,065,562CATCTGGGCCTCGACCTAC
TDF35,064,87335,064,895AACTGCACTCAATTTCCCTATCC
TDP35,064,84935,064,871ACCCGCACAATCCCTAACCCTGA
TDR35,064,82535,064,845TCGCAAGGACTCAGACTCAAG

PCR Primers

PrimerSequence
SUCCATGGTAGTTGTTCGCAA
SDAGCAGCCAATGAGCAGGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR80 bp++-
TDFTDR71 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12687A-A5VGB6C57BL/6NTac
12687A-B1VGB6C57BL/6NTac
12687A-C5VGB6C57BL/6NTac
12687A-A10VGB6C57BL/6NTac