Gene | Clrn1 |
Chromosome | 3 |
Deletion Start | 58,885,037 |
Deletion End | 58,846,156 |
Deletion Size | 38,882 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 58,884,986 | 58,885,004 | GCTGGCGTACTGAGCTTTC |
TUP | 58,884,961 | 58,884,985 | TCTGTGCTCTTGGAGTGGTGACAGC |
TUR | 58,884,857 | 58,884,876 | GCATCTCGCCCATGAACTTG |
TDF | 58,846,765 | 58,846,785 | CACAGTGGCTGCTTGAGTTTG |
TDP | 58,846,738 | 58,846,760 | TGTGCTTTGAAGGTGCCCAGCAA |
TDR | 58,846,640 | 58,846,664 | TGGGAAATTGCTGTGACTAAGAAAG |
PCR Primers
Primer | Sequence |
SU | TCGCATTGCTGCAAACTTAC |
SD | TGCCTGTTGAGTTCTGCTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 148 bp | + | + | - |
TDF | TDR | 146 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12706A-D10 | VGB6 | C57BL/6NTac | |
12706A-H3 | VGB6 | C57BL/6NTac | |