12706   Clrn1     Status: ES cell colonies screened / QC positives

GeneClrn1
Chromosome3
Deletion Start58,885,037
Deletion End58,846,156
Deletion Size38,882
Genome Build38
MGI IDMGI:2388124
NCBI Gene ID229320
BAC ID89F8
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF58,884,98658,885,004GCTGGCGTACTGAGCTTTC
TUP58,884,96158,884,985TCTGTGCTCTTGGAGTGGTGACAGC
TUR58,884,85758,884,876GCATCTCGCCCATGAACTTG
TDF58,846,76558,846,785CACAGTGGCTGCTTGAGTTTG
TDP58,846,73858,846,760TGTGCTTTGAAGGTGCCCAGCAA
TDR58,846,64058,846,664TGGGAAATTGCTGTGACTAAGAAAG

PCR Primers

PrimerSequence
SUTCGCATTGCTGCAAACTTAC
SDTGCCTGTTGAGTTCTGCTTG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR148 bp++-
TDFTDR146 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12706A-D10VGB6C57BL/6NTac
12706A-H3VGB6C57BL/6NTac