Gene | Iqub |
Chromosome | 6 |
Deletion Start | 24,505,904 |
Deletion End | 24,479,151 |
Deletion Size | 26,754 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 24,505,775 | 24,505,795 | TGCCAGAGCAAGACGATGAAG |
TUP | 24,505,752 | 24,505,774 | TGCAGGAACTCACCACCGAGAGC |
TUR | 24,505,732 | 24,505,751 | TGCCTCTCCACGTTCTCCTC |
TDF | 24,479,502 | 24,479,526 | CCCATGTTTGATTTCCAGGATTCAC |
TDP | 24,479,458 | 24,479,487 | AGTCACTGATAGTTTCGGCTCCAGATGAGA |
TDR | 24,479,439 | 24,479,457 | CCCTTGGAGGCCAGATGTG |
PCR Primers
Primer | Sequence |
SU | GAAGGCTGTATGCCTCAGTG |
SD | TACTTTGTACACTATCAGAGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 64 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12743A-D2 | VGB6 | C57BL/6NTac | |
12743A-D3 | VGB6 | C57BL/6NTac | |
12743A-E7 | VGB6 | C57BL/6NTac | |