Gene | Retnlb |
Chromosome | 16 |
Deletion Start | 48,817,216 |
Deletion End | 48,818,809 |
Deletion Size | 1,594 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,817,246 | 48,817,267 | GTCTCCCTTCTCCCACTGATAG |
TUP | 48,817,269 | 48,817,287 | CCCAGGGAACGCGCAATGC |
TUR | 48,817,317 | 48,817,337 | TGACGACTGAGAGCTTCCTTG |
TDF | 48,818,566 | 48,818,589 | AGGGTCTCATCATCTCTTACAGTC |
TDP | 48,818,590 | 48,818,616 | CAAGGGCTCTGACATCTGTGTCTCACA |
TDR | 48,818,643 | 48,818,662 | GCCATAGCCACAAGCACATC |
PCR Primers
Primer | Sequence |
SU | ACTGCTATCCTTGTCCGCTG |
SD | TTTCAGGCCAACAATACGTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12769A-B5 | VGB6 | C57BL/6NTac | |
12769A-E5 | VGB6 | C57BL/6NTac | |
12769A-G2 | VGB6 | C57BL/6NTac | |
12769A-H9 | VGB6 | C57BL/6NTac | |