Gene | Ifnb1 |
Chromosome | 4 |
Deletion Start | 88,522,771 |
Deletion End | 88,522,192 |
Deletion Size | 580 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,522,604 | 88,522,622 | CACCTACAGGGCGGACTTC |
TUP | 88,522,572 | 88,522,599 | TCCCTATGGAGATGACGGAGAAGATGCA |
TUR | 88,522,545 | 88,522,562 | TGGATGGCAAAGGCAGTG |
TDF | 88,522,364 | 88,522,383 | TGTCCTCAACTGCTCTCCAC |
TDP | 88,522,330 | 88,522,359 | AGAGCTATTACTGGAGGGTGCAAAGGTACC |
TDR | 88,522,298 | 88,522,319 | CCAGGCGTAGCTGTTGTACTTC |
PCR Primers
Primer | Sequence |
SU | TCCAGCAATTGGTGAAACTG |
SD | GCTTTAGAGCCACCTGCTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12782A-C6 | VGB6 | C57BL/6NTac | |
12782A-C11 | VGB6 | C57BL/6NTac | |
12782A-D4 | VGB6 | C57BL/6NTac | |