Gene | Ddit3 |
Chromosome | 10 |
Deletion Start | 127,295,344 |
Deletion End | 127,296,116 |
Deletion Size | 773 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 127,295,502 | 127,295,521 | GATGGGCGAGCAGAGTGATG |
TUP | 127,295,523 | 127,295,544 | TGTGGGTGCCTATAGCCCCAGT |
TUR | 127,295,561 | 127,295,581 | GGCCATGAACTGAGCCTCTTG |
TDF | 127,295,784 | 127,295,802 | CAGGGCCAACAGAGGTCAC |
TDP | 127,295,803 | 127,295,824 | ACGCACATCCCAAAGCCCTCGC |
TDR | 127,295,844 | 127,295,862 | TCCTCCTGGGCCATAGAAC |
PCR Primers
Primer | Sequence |
SU | CAAAGTCAAGGCTGCTAGGC |
SD | AGGTCCTTGTCATGGGACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12807A-B7 | VGB6 | C57BL/6NTac | |
12807A-C3 | VGB6 | C57BL/6NTac | |
12807A-G2 | VGB6 | C57BL/6NTac | |
12807A-D1 | VGB6 | C57BL/6NTac | |