Gene | Endog |
Chromosome | 2 |
Deletion Start | 30,171,578 |
Deletion End | 30,174,066 |
Deletion Size | 2,489 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 30,172,359 | 30,172,380 | CAGCAGGGTCTTGATTGTGAAG |
TUP | 30,172,382 | 30,172,403 | AGGTTCCTGGGACATCCACCCA |
TUR | 30,172,407 | 30,172,428 | TGGTCTCCTGTCCATCTCCATC |
TDF | 30,173,090 | 30,173,109 | CCACGTCTGACCTGCCTTAC |
TDP | 30,173,111 | 30,173,133 | ACCTGTAACCCGTGGCTGCACGG |
TDR | 30,173,166 | 30,173,187 | GCTCATTTGTCTGCCAGGAATC |
PCR Primers
Primer | Sequence |
SU | ACATACTTCCCAGGCCAAAC |
SD | CACCCATCCTGGAGACTAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 98 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12818A-E1 | VGB6 | C57BL/6NTac | |
12818A-F4 | VGB6 | C57BL/6NTac | |
12818A-E5 | VGB6 | C57BL/6NTac | |