Gene | Foxq1 |
Chromosome | 13 |
Deletion Start | 31,558,920 |
Deletion End | 31,560,187 |
Deletion Size | 1,268 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 31,558,989 | 31,559,007 | AGCAGCGACGTGCCATCTC |
TUP | 31,559,009 | 31,559,031 | ACTGTCCGCGGCTGGTGACGACT |
TUR | 31,559,049 | 31,559,066 | GCTGTTGGCTGCACAGTC |
TDF | 31,559,866 | 31,559,885 | TGCTACCGCTCTGTGCTTAC |
TDP | 31,559,888 | 31,559,908 | CGCAAGCGAGCCTACGCTGCT |
TDR | 31,559,981 | 31,559,999 | CGGACCTCGGAATGGCTTG |
PCR Primers
Primer | Sequence |
SU | CTCAAAGTCTCTAAACCTCG |
SD | ACACACATTTACACAGCGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 134 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12822A-C4 | VGB6 | C57BL/6NTac | |
12822A-E7 | VGB6 | C57BL/6NTac | |