Gene | 4921517D21Rik |
Chromosome | 9 |
Deletion Start | 107,928,483 |
Deletion End | 107,932,181 |
Deletion Size | 3,699 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 107,929,087 | 107,929,109 | TCCAAGATCAGAGGCAAGACAAG |
TUP | 107,929,113 | 107,929,136 | CCATGTCTGGCTCAGTCTCCCACC |
TUR | 107,929,150 | 107,929,171 | AGAGGCAGTGACGGTGAAGAAG |
TDF | 107,931,554 | 107,931,575 | TGCTGACCTCACTGATTACCTG |
TDP | 107,931,578 | 107,931,601 | TCAGCTACTCTTGTCTGGTGGCCA |
TDR | 107,931,611 | 107,931,632 | CTGTCTGATGATCCCTCCCTTG |
PCR Primers
Primer | Sequence |
SU | AAGCAGGGAACACAGGAGAG |
SD | AATTACCATGGCAACAAGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 85 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12866A-E6 | VGB6 | C57BL/6NTac | |
12866A-G9 | VGB6 | C57BL/6NTac | |
12866A-H8 | VGB6 | C57BL/6NTac | |