Gene | 1600015I10Rik |
Chromosome | 6 |
Deletion Start | 48,930,089 |
Deletion End | 48,933,561 |
Deletion Size | 3,473 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,930,532 | 48,930,553 | CAAAGCAGAGTACAGCCTCATC |
TUP | 48,930,554 | 48,930,576 | TACCGTACGCTGACAGAGGCCAC |
TUR | 48,930,592 | 48,930,613 | GTCAGTGGTGTCAAGGAAGAAC |
TDF | 48,933,147 | 48,933,169 | TCCTAGTACCCACTGCCTATGTC |
TDP | 48,933,174 | 48,933,197 | CTGTTGCCAACCACTGCCTAGACC |
TDR | 48,933,206 | 48,933,230 | ACTCAGTAACTACGACTGCTGGAAC |
PCR Primers
Primer | Sequence |
SU | CCTCTGACCCAGAAGGACAC |
SD | AGAGGGTTTCTCTGCCCTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 82 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12878A-E2 | VGB6 | C57BL/6NTac | |
12878B-A6 | VGB6 | C57BL/6NTac | |
12878B-B5 | VGB6 | C57BL/6NTac | |
12878B-B6 | VGB6 | C57BL/6NTac | |
12878B-C2 | VGB6 | C57BL/6NTac | |