Gene | Krtap17-1 |
Chromosome | 11 |
Deletion Start | 99,993,936 |
Deletion End | 99,993,543 |
Deletion Size | 394 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 99,993,880 | 99,993,900 | CAGGAACAGGACTGCTGTGAG |
TUP | 99,993,858 | 99,993,878 | AGTGTTGCTGCCAGCAGGGCT |
TUR | 99,993,797 | 99,993,815 | CCTCCGCAGCTAGAACCTC |
TDF | 99,993,644 | 99,993,662 | GGTGCTGTGGTCCAGTGTG |
TDP | | | TGTCAGCCCACACC |
TDR | 99,993,600 | 99,993,623 | GGGAAGGTCTTCATTTTGTCTCAC |
PCR Primers
Primer | Sequence |
SU | AAACAGGCTACATGGCCAAC |
SD | ATGGACCAAGAGGTCCAAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 63 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12902A-H5 | VGB6 | C57BL/6NTac | |
12902A-C7 | VGB6 | C57BL/6NTac | |
12902A-G6 | VGB6 | C57BL/6NTac | |
12902A-B2 | VGB6 | C57BL/6NTac | |