12909   Papolb     Status: ES cell colonies screened / QC positives

GenePapolb
Chromosome5
Deletion Start142,529,883
Deletion End142,527,856
Deletion Size2,028
Genome Build38
MGI IDMGI:1932115
NCBI Gene ID56522
BAC ID60H24
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF142,529,768142,529,786ACACAGACCGCGAACTCAC
TUP142,529,744142,529,767CCAGAAGCTGATCGAGACCCTCCA
TUR142,529,712142,529,734GTTCCTCTTCCTCTTCAAACACC
TDF142,528,217142,528,237AAACCCTCAGGGCAGAAACAG
TDP142,528,190142,528,214CTGCTCTGGCTGTTATGGCAGCATC
TDR142,528,154142,528,174TGCAAGGAAACATCAGGAAAC

PCR Primers

PrimerSequence
SUTCCTCCAATCTCGTGAGAGC
SDGGACTTCAAGATTAGGCCAGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR75 bp++-
TDFTDR84 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12909B-C7VGB6C57BL/6NTac
12909B-E5VGB6C57BL/6NTac
12909B-F7VGB6C57BL/6NTac
12909B-G8VGB6C57BL/6NTac
12909B-F2VGB6C57BL/6NTac