Gene | Papolb |
Chromosome | 5 |
Deletion Start | 142,529,883 |
Deletion End | 142,527,856 |
Deletion Size | 2,028 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 142,529,768 | 142,529,786 | ACACAGACCGCGAACTCAC |
TUP | 142,529,744 | 142,529,767 | CCAGAAGCTGATCGAGACCCTCCA |
TUR | 142,529,712 | 142,529,734 | GTTCCTCTTCCTCTTCAAACACC |
TDF | 142,528,217 | 142,528,237 | AAACCCTCAGGGCAGAAACAG |
TDP | 142,528,190 | 142,528,214 | CTGCTCTGGCTGTTATGGCAGCATC |
TDR | 142,528,154 | 142,528,174 | TGCAAGGAAACATCAGGAAAC |
PCR Primers
Primer | Sequence |
SU | TCCTCCAATCTCGTGAGAGC |
SD | GGACTTCAAGATTAGGCCAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12909B-C7 | VGB6 | C57BL/6NTac | |
12909B-E5 | VGB6 | C57BL/6NTac | |
12909B-F7 | VGB6 | C57BL/6NTac | |
12909B-G8 | VGB6 | C57BL/6NTac | |
12909B-F2 | VGB6 | C57BL/6NTac | |