| Gene | Cytl1 |
| Chromosome | 5 |
| Deletion Start | 37,735,551 |
| Deletion End | 37,739,388 |
| Deletion Size | 3,838 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | 37,735,924 | 37,735,945 | TGCTGAGGAATTATGGGACAAC |
| TUP | 37,735,947 | 37,735,970 | ACTCAGCCCTCTGTCTCAGCTTCC |
| TUR | 37,735,997 | 37,736,015 | TGTCACACCCAGGGAGATG |
| TDF | 37,738,987 | 37,739,004 | TGCACCCACCCAGTCATC |
| TDP | 37,739,005 | 37,739,031 | TGTCCATCTGGTCAACCAAAGCCTGAG |
| TDR | 37,739,045 | 37,739,067 | GGGCACTTTCCCTATTCACATTC |
PCR Primers
| Primer | Sequence |
| SU | GGCCTCTAATCCAGTCTCCC |
| SD | TGAGAGAGAGGCAGGAAAGC |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| TUF | TUR | 92 bp | + | + | - |
| TDF | TDR | 81 bp | + | + | - |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 12950A-B4 | VGB6 | C57BL/6NTac | |
| 12950A-B7 | VGB6 | C57BL/6NTac | |
| 12950A-G7 | VGB6 | C57BL/6NTac | |
| 12950A-E6 | VGB6 | C57BL/6NTac | |
