Gene | Dhh |
Chromosome | 15 |
Deletion Start | 98,898,269 |
Deletion End | 98,893,904 |
Deletion Size | 4,366 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 98,897,956 | 98,897,979 | GATGACAGAGGTAAGGAGAGTTTC |
TUP | 98,897,930 | 98,897,952 | CCACCTGCTCTACCACACCACCA |
TUR | 98,897,894 | 98,897,915 | TCATCCTCCAGGGTTGTTGTAG |
TDF | 98,894,853 | 98,894,872 | CCGGATTCGACTGGGTCTAC |
TDP | 98,894,830 | 98,894,852 | TACGAGTCCCGCAACCACATCCA |
TDR | 98,894,788 | 98,894,809 | GACCATCATCTGGCCTCTACTG |
PCR Primers
Primer | Sequence |
SU | TGGTGTCCAGTTGTGACTGC |
SD | TGTTAAAGCCAAGCTCCAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12988A-A2 | VGB6 | C57BL/6NTac | |
12988A-B8 | VGB6 | C57BL/6NTac | |
12988A-D4 | VGB6 | C57BL/6NTac | |
12988A-H4 | VGB6 | C57BL/6NTac | |