Gene | Ihh |
Chromosome | 1 |
Deletion Start | 74,951,325 |
Deletion End | 74,946,084 |
Deletion Size | 5,242 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 74,950,570 | 74,950,588 | GACCTGGCTGCCTCTTGTG |
TUP | 74,950,546 | 74,950,569 | CCTCCGGGAACCACGAAATCCCTC |
TUR | 74,950,519 | 74,950,540 | GCTGGGCTGTGAGAAATGTTAG |
TDF | 74,946,293 | 74,946,314 | ACTTGTGGTGGAGGATGTGGTG |
TDP | 74,946,270 | 74,946,291 | CCTCCTGCTTTGCAGCTGTGGC |
TDR | 74,946,208 | 74,946,227 | CCCATGCCAAACTGGGAAAC |
PCR Primers
Primer | Sequence |
SU | AGGCAGGGACATGGATAGG |
SD | TAGCAGCATCGACTGAGGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 107 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13008B-A5 | VGB6 | C57BL/6NTac | |
13008B-E9 | VGB6 | C57BL/6NTac | |
13008B-C8 | VGB6 | C57BL/6NTac | |
13008B-B1 | VGB6 | C57BL/6NTac | |