Gene | Kcna3 |
Chromosome | 3 |
Deletion Start | 107,036,426 |
Deletion End | 107,038,030 |
Deletion Size | 1,605 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 107,036,999 | 107,037,019 | TCAGTGCTGGTCATTCTCATC |
TUP | 107,037,021 | 107,037,047 | CCATTGTCATCTTCTGCTTGGAGACGC |
TUR | 107,037,067 | 107,037,086 | GGGAGGCGGGATAGTCTTTC |
TDF | 107,037,320 | 107,037,342 | CTGGCTGAACGACAAGGTAATGG |
TDP | 107,037,344 | 107,037,363 | CAGCAGGCCATGTCGCTGGC |
TDR | 107,037,400 | 107,037,419 | GGCGGGAGAGCTTGAAGATG |
PCR Primers
Primer | Sequence |
SU | GAGGAGGGAGGAGGAGGC |
SD | CTCAGGATGTGGCTGTAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13010A-B1 | VGB6 | C57BL/6NTac | |
13010A-C3 | VGB6 | C57BL/6NTac | |
13010A-G10 | VGB6 | C57BL/6NTac | |
13010A-F11 | VGB6 | C57BL/6NTac | |