Gene | C3ar1 |
Chromosome | 6 |
Deletion Start | 122,851,253 |
Deletion End | 122,849,778 |
Deletion Size | 1,476 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 122,850,916 | 122,850,935 | GCCAGTGTCTTCCTGCTTAC |
TUP | 122,850,893 | 122,850,915 | TGCCATTAGCCTGGACCGATGTC |
TUR | 122,850,842 | 122,850,864 | CGGTTCTCACGTTTCGATGATTC |
TDF | 122,850,468 | 122,850,489 | TGGTGGAAAGCCTCCTAATGTC |
TDP | 122,850,449 | 122,850,466 | TCACAGCCGCCGTACCCA |
TDR | 122,850,397 | 122,850,415 | AAAGCGTCAGCGTTCAGTG |
PCR Primers
Primer | Sequence |
SU | AGCCCGAATCTCAGTAGCAG |
SD | AACTCAACACTCCCTGCTTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13088A-A3 | VGB6 | C57BL/6NTac | |
13088A-G6 | VGB6 | C57BL/6NTac | |
13088A-F8 | VGB6 | C57BL/6NTac | |
13088A-G12 | VGB6 | C57BL/6NTac | |
13088A-A12 | VGB6 | C57BL/6NTac | |
13088A-G2 | VGB6 | C57BL/6NTac | |