13088   C3ar1     Status: ES cell colonies screened / QC positives

GeneC3ar1
Chromosome6
Deletion Start122,851,253
Deletion End122,849,778
Deletion Size1,476
Genome Build38
MGI IDMGI:1097680
NCBI Gene ID12267
BAC ID116L18
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF122,850,916122,850,935GCCAGTGTCTTCCTGCTTAC
TUP122,850,893122,850,915TGCCATTAGCCTGGACCGATGTC
TUR122,850,842122,850,864CGGTTCTCACGTTTCGATGATTC
TDF122,850,468122,850,489TGGTGGAAAGCCTCCTAATGTC
TDP122,850,449122,850,466TCACAGCCGCCGTACCCA
TDR122,850,397122,850,415AAAGCGTCAGCGTTCAGTG

PCR Primers

PrimerSequence
SUAGCCCGAATCTCAGTAGCAG
SDAACTCAACACTCCCTGCTTTC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR94 bp++-
TDFTDR93 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13088A-A3VGB6C57BL/6NTac
13088A-G6VGB6C57BL/6NTac
13088A-F8VGB6C57BL/6NTac
13088A-G12VGB6C57BL/6NTac
13088A-A12VGB6C57BL/6NTac
13088A-G2VGB6C57BL/6NTac