Gene | Atrn |
Chromosome | 2 |
Deletion Start | 130,906,564 |
Deletion End | 130,935,632 |
Deletion Size | 29,069 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 130,907,078 | 130,907,096 | GCCTCCTGGAGGGATGTTC |
TUP | 130,907,097 | 130,907,120 | ATTTGGTGGCCTTCGGGTCTGCCT |
TUR | 130,907,130 | 130,907,151 | GTGTTCCCGTTCCTTCTCAATC |
TDF | 130,934,980 | 130,935,000 | TGTGGAGTCAGAGGGAGTTAC |
TDP | 130,935,005 | 130,935,031 | ACACTTGTTGAAATTGCCCAGGCTTCA |
TDR | 130,935,059 | 130,935,077 | ACAAGCCCTGCCCAGAGTC |
PCR Primers
Primer | Sequence |
SU | AGGCGTCCAAAGGGTAACAC |
SD | GTTCAAGAATGTGAAATGAGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 98 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13112A-C12 | VGB6 | C57BL/6NTac | |
13112A-D4 | VGB6 | C57BL/6NTac | |
13112A-D7 | VGB6 | C57BL/6NTac | |
13112A-F4 | VGB6 | C57BL/6NTac | |
13112A-H11 | VGB6 | C57BL/6NTac | |