Gene | Icos |
Chromosome | 1 |
Deletion Start | 60,977,962 |
Deletion End | 60,997,731 |
Deletion Size | 19,770 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 60,978,150 | 60,978,173 | AACAAGCACAGACAGTTTCAGAGG |
TUP | 60,978,175 | 60,978,198 | ACTGAAGCTCACGGCTCAGGGCGT |
TUR | 60,978,206 | 60,978,225 | CACTGACATCCACGCTGACC |
TDF | 60,997,451 | 60,997,475 | CAACACATACCCATGAGAGTCTTAC |
TDP | 60,997,477 | 60,997,501 | TGACTGCATCTGGACCCTGTGATGG |
TDR | 60,997,512 | 60,997,535 | GTGAGGACTGGACATTATCTGAAC |
PCR Primers
Primer | Sequence |
SU | AAGCACAAATGACACATAAATAGC |
SD | AAATGAGGACAGATGGTGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13124A-A10 | VGB6 | C57BL/6NTac | |
13124A-G4 | VGB6 | C57BL/6NTac | |