Gene | Ptcd3 |
Chromosome | 6 |
Deletion Start | 71,908,737 |
Deletion End | 71,881,146 |
Deletion Size | 27,592 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 71,908,616 | 71,908,637 | GCAGGTAAGAAGACCCAGAGTC |
TUP | 71,908,586 | 71,908,611 | TGGTCTTGCATTTCCCTGAGAGTCGT |
TUR | 71,908,516 | 71,908,537 | GCTACCTCGTGTTACCCTTGAG |
TDF | 71,881,607 | 71,881,626 | CATCCGGTAGCACTGCTCTG |
TDP | 71,881,577 | 71,881,602 | TTGAGGTTGTAAAGCTGGCAAGTGCC |
TDR | 71,881,536 | 71,881,558 | ACTACTCTTTGGGCAAGGCTCTC |
PCR Primers
Primer | Sequence |
SU | GAGTCTTGTAGCGCAGAGCC |
SD | TCTAGGCCAAAGGACCACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 122 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13163A-B11 | VGB6 | C57BL/6NTac | |
13163A-D8 | VGB6 | C57BL/6NTac | |
13163A-E4 | VGB6 | C57BL/6NTac | |
13163A-F7 | VGB6 | C57BL/6NTac | |
13163A-C9 | VGB6 | C57BL/6NTac | |
13163A-A7 | VGB6 | C57BL/6NTac | |