Gene | Gpc2 |
Chromosome | 5 |
Deletion Start | 138,279,811 |
Deletion End | 138,274,221 |
Deletion Size | 5,591 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 138,278,979 | 138,278,998 | GGTGAGCACCTTCAAGTCTG |
TUP | 138,278,953 | 138,278,977 | CCTCAGGAGTACACCTGCTGTTCCA |
TUR | 138,278,895 | 138,278,913 | TCTACCAGGCCACGGAATG |
TDF | 138,274,426 | 138,274,447 | CTTGGAGTGAGAGGAGGAAGTG |
TDP | 138,274,400 | 138,274,423 | AGTGCCAGATACAACCAGGGCCGA |
TDR | 138,274,363 | 138,274,383 | GGGTATGGAGGCCAACAGATG |
PCR Primers
Primer | Sequence |
SU | TGCAATTGGCTCAGTTTCAC |
SD | CAGGTTCTACCCTCCTTCCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13172A-C7 | VGB6 | C57BL/6NTac | |
13172A-C12 | VGB6 | C57BL/6NTac | |
13172A-A7 | VGB6 | C57BL/6NTac | |