Gene | 2700097O09Rik |
Chromosome | 12 |
Deletion Start | 55,080,074 |
Deletion End | 55,045,771 |
Deletion Size | 34,304 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 55,079,859 | 55,079,883 | CATACCCTACACCTAGTCATCAGAC |
TUP | 55,079,802 | 55,079,830 | CAACTTTAGGTGGTTTGTGATTCCGGTGC |
TUR | 55,079,743 | 55,079,766 | GTAGTATCGGCCTGTACGAGTAAT |
TDF | 55,046,202 | 55,046,222 | GGAGCTGTCGAGATGGTTCAG |
TDP | 55,046,178 | 55,046,201 | CCGCTTTAGAGCACAGGACCTGCA |
TDR | 55,046,143 | 55,046,165 | AGCTGCGAACTGCCATATAGGTG |
PCR Primers
Primer | Sequence |
SU | TGACCTTTGACCTTAGTGTTC |
SD | CAGGAAGGGAAAGAACCTCG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 141 bp | + | + | - |
TDF | TDR | 80 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13179A-A10 | VGB6 | C57BL/6NTac | |
13179A-B7 | VGB6 | C57BL/6NTac | |
13179A-B11 | VGB6 | C57BL/6NTac | |
13179A-G2 | VGB6 | C57BL/6NTac | |
13179A-G10 | VGB6 | C57BL/6NTac | |