Gene | BC004004 |
Chromosome | 17 |
Deletion Start | 29,282,082 |
Deletion End | 29,301,538 |
Deletion Size | 19,457 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 29,282,746 | 29,282,763 | ACCCGAGCCAGTGCTTTC |
TUP | 29,282,767 | 29,282,788 | AGCGAACAGCTGGCGCTCACTC |
TUR | 29,282,789 | 29,282,809 | CACCAGCCGAATGTGATGAAC |
TDF | 29,301,241 | 29,301,258 | TTCGGAGAGCCCAGAGAC |
TDP | 29,301,261 | 29,301,285 | TCAGAGTAAGAGCAGCCAGACAGCA |
TDR | 29,301,321 | 29,301,343 | CAGCAACAGGAAAGCAATGAATG |
PCR Primers
Primer | Sequence |
SU | TGGATACAGTGGCCTGTCTG |
SD | ACAGAATCAGGACCCACTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 64 bp | + | + | - |
TDF | TDR | 103 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13217A-F6 | VGB6 | C57BL/6NTac | |
13217A-H10 | VGB6 | C57BL/6NTac | |