Gene | Cnnm4 |
Chromosome | 1 |
Deletion Start | 36,472,077 |
Deletion End | 36,506,709 |
Deletion Size | 34,633 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 36,472,166 | 36,472,184 | CAGATGGACGGACAAGGAC |
TUP | 36,472,185 | 36,472,207 | TCCCTGCTCTTCATGGTGGAGGA |
TUR | 36,472,227 | 36,472,247 | GAGAAGGATGTGCAGCCAGAG |
TDF | 36,505,834 | 36,505,853 | TCTGTTCTGGAGGCAGTGTG |
TDP | 36,505,860 | 36,505,884 | CCAAACCCGAGTCTCTTACCTGCCA |
TDR | 36,505,891 | 36,505,914 | GGAATGTAGTTCTGTGGTGAGGTG |
PCR Primers
Primer | Sequence |
SU | GCTAGCGAGCTGCAACAAG |
SD | GAGTGACAGACACAGGCTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 82 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13224A-A3 | VGB6 | C57BL/6NTac | |
13224A-C4 | VGB6 | C57BL/6NTac | |
13224A-B9 | VGB6 | C57BL/6NTac | |
13224A-A9 | VGB6 | C57BL/6NTac | |