13284   Cox4i1     Status: ES cell colonies screened / QC positives

GeneCox4i1
Chromosome8
Deletion Start120,669,313
Deletion End120,674,152
Deletion Size4,840
Genome Build38
MGI IDMGI:88473
NCBI Gene ID12857
BAC ID395F21
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 8

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF120,670,133120,670,154TTCCCTCCTTCCTCTCAGTCTC
TUP120,670,157120,670,182TGTGTAGCTCTGACTGGCTTTGGACC
TUR120,670,206120,670,227TGCCTTTAACCACAGCATTCAC
TDF120,673,565120,673,585TGTGAGCTAGGAGACCCATTG
TDP120,673,587120,673,609CTGCGTGGCTGGCTGTTCCCAAG
TDR120,673,645120,673,665CAAGCGCAACAGTGTCCAAAC

PCR Primers

PrimerSequence
SUCTGTGCCTTCGCATCAGTAA
SDACCCATCACAGTGGGTAGTAAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR95 bp++-
TDFTDR101 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13284A-B10VGB6C57BL/6NTac
13284A-C2VGB6C57BL/6NTac
13284A-G12VGB6C57BL/6NTac
13284A-D8VGB6C57BL/6NTac
13284A-E12VGB6C57BL/6NTac
13284A-G10VGB6C57BL/6NTac