Gene | Cox4i1 |
Chromosome | 8 |
Deletion Start | 120,669,313 |
Deletion End | 120,674,152 |
Deletion Size | 4,840 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 120,670,133 | 120,670,154 | TTCCCTCCTTCCTCTCAGTCTC |
TUP | 120,670,157 | 120,670,182 | TGTGTAGCTCTGACTGGCTTTGGACC |
TUR | 120,670,206 | 120,670,227 | TGCCTTTAACCACAGCATTCAC |
TDF | 120,673,565 | 120,673,585 | TGTGAGCTAGGAGACCCATTG |
TDP | 120,673,587 | 120,673,609 | CTGCGTGGCTGGCTGTTCCCAAG |
TDR | 120,673,645 | 120,673,665 | CAAGCGCAACAGTGTCCAAAC |
PCR Primers
Primer | Sequence |
SU | CTGTGCCTTCGCATCAGTAA |
SD | ACCCATCACAGTGGGTAGTAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 101 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13284A-B10 | VGB6 | C57BL/6NTac | |
13284A-C2 | VGB6 | C57BL/6NTac | |
13284A-G12 | VGB6 | C57BL/6NTac | |
13284A-D8 | VGB6 | C57BL/6NTac | |
13284A-E12 | VGB6 | C57BL/6NTac | |
13284A-G10 | VGB6 | C57BL/6NTac | |