Gene | Mas1 |
Chromosome | 17 |
Deletion Start | 12,842,531 |
Deletion End | 12,841,512 |
Deletion Size | 1,020 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 12,842,485 | 12,842,508 | TGCTGAAGAGAAAGCCATGAATAC |
TUP | 12,842,461 | 12,842,483 | TCCAGCAGAAATGCCTCCCTGGG |
TUR | 12,842,434 | 12,842,457 | ACTATGGGAATGGGTGGGTGTGAG |
TDF | 12,841,779 | 12,841,802 | GTCCTCTACTTGCTGTACTACGAG |
TDP | 12,841,754 | 12,841,777 | ACTGGTCAGCCTTTGGGAACCTGC |
TDR | 12,841,710 | 12,841,728 | GTTGGCGCTGCTGTTGATG |
PCR Primers
Primer | Sequence |
SU | TCAGCTGTCTCTTTCATTTCAA |
SD | GGTGCTTTGCCTACCTCATC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13306A-A5 | VGB6 | C57BL/6NTac | |
13306A-B3 | VGB6 | C57BL/6NTac | |
13306A-C1 | VGB6 | C57BL/6NTac | |
13306A-C4 | VGB6 | C57BL/6NTac | |
13306A-D3 | VGB6 | C57BL/6NTac | |
13306A-D7 | VGB6 | C57BL/6NTac | |