13316   Ptprcap     Status: ES cell colonies screened / QC positives

GenePtprcap
Chromosome19
Deletion Start4,154,704
Deletion End4,156,600
Deletion Size1,897
Genome Build38
MGI IDMGI:97811
NCBI Gene ID19265
BAC ID34K15
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 19

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF4,154,8884,154,906CCTGGGCACAGCCCTATTC
TUP4,154,9084,154,932AAGACCCTTGGGACAGTCCTCCACC
TUR4,154,9664,154,988AGCATACCAAGCTCTGGAGAAAG
TDF4,155,6694,155,690TCACCATGAGGCTGTGAAGTAG
TDP4,155,6914,155,715TGTCTGAGCAAAGGGAAGGCCAACG
TDR4,155,7594,155,779CCTTCAACCCAACCCTGTAAC

PCR Primers

PrimerSequence
SUATGCACACTTCCTCCCTTTG
SDGAGAGGGCAGCTGTGAGAAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR101 bp++-
TDFTDR111 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13316A-A11VGB6C57BL/6NTac
13316A-B4VGB6C57BL/6NTac
13316A-C4VGB6C57BL/6NTac
13316A-D1VGB6C57BL/6NTac
13316A-F6VGB6C57BL/6NTac
13316A-F7VGB6C57BL/6NTac