13318   Rpn1     Status: ES cell colonies screened / QC positives

GeneRpn1
Chromosome6
Deletion Start88,084,534
Deletion End88,103,571
Deletion Size19,038
Genome Build38
MGI IDMGI:98084
NCBI Gene ID103963
BAC ID286P17
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF88,084,62588,084,644TGGTCAACGAGGACGTGAAG
TUP88,084,64788,084,668CACGGTGGACCTGAGCAGCCAC
TUR88,084,68488,084,702GTACCAGGACCACCTCAGC
TDF88,102,99288,103,013CACTTTCTCCTTTGCTGCTTTC
TDP88,103,01788,103,037AGCCTGGCACTTGGGACAGCA
TDR88,103,03888,103,058CTGTTAGGACCAGACCACTTC

PCR Primers

PrimerSequence
SUTTTGAGCTGAGAGGCCAGAG
SDAGCAAATGTTCACAGTCCCTC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR78 bp++-
TDFTDR67 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13318A-A3VGB6C57BL/6NTac
13318A-A10VGB6C57BL/6NTac
13318A-E9VGB6C57BL/6NTac
13318A-E7VGB6C57BL/6NTac
13318A-E3VGB6C57BL/6NTac
13318A-D6VGB6C57BL/6NTac