Gene | Rpn1 |
Chromosome | 6 |
Deletion Start | 88,084,534 |
Deletion End | 88,103,571 |
Deletion Size | 19,038 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,084,625 | 88,084,644 | TGGTCAACGAGGACGTGAAG |
TUP | 88,084,647 | 88,084,668 | CACGGTGGACCTGAGCAGCCAC |
TUR | 88,084,684 | 88,084,702 | GTACCAGGACCACCTCAGC |
TDF | 88,102,992 | 88,103,013 | CACTTTCTCCTTTGCTGCTTTC |
TDP | 88,103,017 | 88,103,037 | AGCCTGGCACTTGGGACAGCA |
TDR | 88,103,038 | 88,103,058 | CTGTTAGGACCAGACCACTTC |
PCR Primers
Primer | Sequence |
SU | TTTGAGCTGAGAGGCCAGAG |
SD | AGCAAATGTTCACAGTCCCTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 67 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13318A-A3 | VGB6 | C57BL/6NTac | |
13318A-A10 | VGB6 | C57BL/6NTac | |
13318A-E9 | VGB6 | C57BL/6NTac | |
13318A-E7 | VGB6 | C57BL/6NTac | |
13318A-E3 | VGB6 | C57BL/6NTac | |
13318A-D6 | VGB6 | C57BL/6NTac | |