Gene | Tbxas1 |
Chromosome | 6 |
Deletion Start | 38,919,156 |
Deletion End | 38,951,925 |
Deletion Size | 32,770 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 38,919,226 | 38,919,246 | TGGCCCTCCTGAAATGGTAAG |
TUP | 38,919,249 | 38,919,268 | TGGCCAACCACAGGGACTGC |
TUR | 38,919,271 | 38,919,293 | CTCCTGGGCTGACATTTGTAGTG |
TDF | 38,951,361 | 38,951,379 | TGGCCTCATGCACATCTTC |
TDP | 38,951,380 | 38,951,405 | TGGCACCCTAGAGTTTCTGCCTATGA |
TDR | 38,951,406 | 38,951,423 | GGCTCTCAGCAGGACTTC |
PCR Primers
Primer | Sequence |
SU | ACGGCGTATTTGAGAAGCAG |
SD | AAGGGATGGAACATGACAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 68 bp | + | + | - |
TDF | TDR | 63 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13324A-A3 | VGB6 | C57BL/6NTac | |
13324A-A7 | VGB6 | C57BL/6NTac | |
13324A-A9 | VGB6 | C57BL/6NTac | |
13324A-B7 | VGB6 | C57BL/6NTac | |
13324A-B9 | VGB6 | C57BL/6NTac | |
13324A-C10 | VGB6 | C57BL/6NTac | |