Gene | Abt1 |
Chromosome | 13 |
Deletion Start | 23,423,829 |
Deletion End | 23,421,969 |
Deletion Size | 1,861 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 23,423,620 | 23,423,638 | CAACCTGCTCAGCGCCTAC |
TUP | 23,423,579 | 23,423,602 | TTTCTTCCAGGCCGAGGGTAAGCC |
TUR | 23,423,551 | 23,423,571 | CGCATCGTCACCTCTCCTTTC |
TDF | 23,422,621 | 23,422,643 | CAGGAGGAAAGAAGGGAGCTAAG |
TDP | 23,422,593 | 23,422,618 | CAGCAAGGACTATACCGAAGGCTGGG |
TDR | 23,422,571 | 23,422,590 | ACACGCTTGTCTCGGAACTC |
PCR Primers
Primer | Sequence |
SU | ACCAGGGTACGCTCTTGATG |
SD | AGCCTTCCACCACAGTGAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13352A-B5 | VGB6 | C57BL/6NTac | |
13352A-B12 | VGB6 | C57BL/6NTac | |