13362   Aif1     Status: ES cell colonies screened / QC one positive

GeneAif1
Chromosome17
Deletion Start35,172,536
Deletion End35,171,040
Deletion Size1,497
Genome Build38
MGI IDMGI:1343098
NCBI Gene ID11629
BAC ID218H21
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 17

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF35,172,22135,172,239GGGCTGACCAGGATGACAC
TUP35,172,17735,172,204CCCTCAACAGCAATTCCTCGATGATCCC
TUR35,172,14735,172,168GGACGGCAGATCCTCATCATTG
TDF35,171,46435,171,483CCGAGGAGACGTTCAGCTAC
TDP35,171,43635,171,463TCTGACTTTCTCAGAATGATGCTGGGCA
TDR35,171,36835,171,388TATGGAGAAGATGGGCCAGTC

PCR Primers

PrimerSequence
SUGCTTCTTTGGAGGAGCTGTG
SDCACCTATATTCTCTCTTGGTTTGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR93 bp++-
TDFTDR116 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13362A-B5VGB6C57BL/6NTac