13380   Atp5k     Status: ES cell colonies screened / QC positives

GeneAtp5k
Chromosome5
Deletion Start108,434,358
Deletion End108,433,205
Deletion Size1,154
Genome Build38
MGI IDMGI:106636
NCBI Gene ID11958
BAC ID216C2
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF108,434,094108,434,118CCTCGGTGTGCCTTCTACTATAATG
TUP108,434,069108,434,091TTCTTCTGCAGTTCGGCCGGTAC
TUR108,433,990108,434,008CACCCGGAATCCCGTTCTC
TDF108,433,631108,433,653CATCCCATGACTGTTTTGTCCAG
TDP108,433,611108,433,630TGCTGTCCTCCGTGGAGCCC
TDR108,433,557108,433,579GCAATTTGCAGATGCTACCCAAG

PCR Primers

PrimerSequence
SUTCAGGAAGGGCCAATACAAG
SDACCCACGTTATTGTGAAGGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR129 bp++-
TDFTDR97 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13380A-A11VGB6C57BL/6NTac
13380A-D2VGB6C57BL/6NTac
13380A-D4VGB6C57BL/6NTac
13380A-D7VGB6C57BL/6NTac
13380A-D5VGB6C57BL/6NTac
13380A-H8VGB6C57BL/6NTac