Gene | D19Ertd737e |
Chromosome | 19 |
Deletion Start | 60,221,293 |
Deletion End | 60,199,435 |
Deletion Size | 21,859 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 60,221,148 | 60,221,168 | CAGTACGAAGCCAGCAGTGTC |
TUP | 60,221,126 | 60,221,147 | AGACTTCCCGACAGGCCAGCCA |
TUR | 60,221,099 | 60,221,119 | ATCCGCATCAGCCTCTGTCTC |
TDF | 60,200,382 | 60,200,404 | TTCCTGCTCAGCCTACAGAGTTG |
TDP | 60,200,353 | 60,200,380 | TGAGGGAGCTTGAAGGGTCTCATGACTA |
TDR | 60,200,304 | 60,200,327 | CCTGAACAGAAATCCTTCCCAAAC |
PCR Primers
Primer | Sequence |
SU | CCTACTGACATTCTTGAGCC |
SD | TAGACCAAACAGATCAAACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 101 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13460C-G1 | VGB6 | C57BL/6NTac | |