Gene | Egr1 |
Chromosome | 18 |
Deletion Start | 34,861,492 |
Deletion End | 34,863,777 |
Deletion Size | 2,286 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 34,861,726 | 34,861,747 | AGCAGCGCCTTCAATCCTCAAG |
TUP | 34,861,751 | 34,861,775 | AGCCGAGCGAACAACCCTATGAGCA |
TUR | 34,861,782 | 34,861,801 | CAGACCACCGCTTACCTGTG |
TDF | 34,863,009 | 34,863,029 | GCCTTCGCTCACTCCACTATC |
TDP | 34,863,034 | 34,863,059 | ATTAAAGCCTTCGCCACTCAGTCGGG |
TDR | 34,863,077 | 34,863,101 | TGGGATTGGTAGGTGGTATTAAGAG |
PCR Primers
Primer | Sequence |
SU | GAGTCGCGAGAGATCCCAG |
SD | TGCTGTACAAAGATGCAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13489B-A3 | VGB6 | C57BL/6NTac | |
13489B-A8 | VGB6 | C57BL/6NTac | |
13489B-G10 | VGB6 | C57BL/6NTac | |
13489B-D11 | VGB6 | C57BL/6NTac | |
13489B-E2 | VGB6 | C57BL/6NTac | |
13489B-C5 | VGB6 | C57BL/6NTac | |