Gene | Lsmd1 |
Chromosome | 11 |
Deletion Start | 69,395,895 |
Deletion End | 69,396,633 |
Deletion Size | 739 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 69,396,167 | 69,396,186 | GCCCTAGCAGGACTCTGATG |
TUP | 69,396,190 | 69,396,210 | AACAGGAGGACTCGCCGGCCA |
TUR | 69,396,242 | 69,396,264 | TACGGATACGCATGGTCTTGTTG |
TDF | 69,396,282 | 69,396,301 | CTAGTCGGCTGCTTCCTGTG |
TDP | 69,396,307 | 69,396,332 | ATCGCGACTGTAATGTCATCCTGGGC |
TDR | 69,396,342 | 69,396,362 | ACCAGAAGGCTTGAGGAACTC |
PCR Primers
Primer | Sequence |
SU | AGTATCGACGAGGAGACTAG |
SD | GCAGAGAGGGCCTTGTTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 98 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13612A-A2 | VGB6 | C57BL/6NTac | |
13612A-C4 | VGB6 | C57BL/6NTac | |
13612A-A10 | VGB6 | C57BL/6NTac | |
13612A-A7 | VGB6 | C57BL/6NTac | |
13612A-A4 | VGB6 | C57BL/6NTac | |