13648   Msx1     Status: ES cell colonies screened / QC positives

GeneMsx1
Chromosome5
Deletion Start37,824,330
Deletion End37,821,253
Deletion Size3,078
Genome Build38
MGI IDMGI:97168
NCBI Gene ID17701
BAC ID292M7
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF37,823,56037,823,582GGTGTCTGTGGACCTTCTTATTC
TUP37,823,53737,823,559TTCCGGTAGTCAGGACACCAGGG
TUR37,823,50537,823,525TGAGTTTAGGGTCAGGTGGAG
TDF37,821,63137,821,650AAGCCCAGGACGCCTTTCAC
TDP37,821,60737,821,629ACAGCTCAGCTGCTGGCTCTGGA
TDR37,821,58437,821,603ACTGCTTCTGGCGGAACTTG

PCR Primers

PrimerSequence
SUGCTGGCCTTGCCTTATTAAC
SDAGCTGATGGAGTCTCATGGC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR78 bp++-
TDFTDR67 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
13648A-E7VGB6C57BL/6NTac
13648A-B4VGB6C57BL/6NTac
13648A-B5VGB6C57BL/6NTac
13648A-H4VGB6C57BL/6NTac