Gene | Nme2 |
Chromosome | 11 |
Deletion Start | 93,955,617 |
Deletion End | 93,949,895 |
Deletion Size | 5,723 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 93,955,341 | 93,955,359 | TTTGACCTCCGCCTCTCAC |
TUP | 93,955,314 | 93,955,334 | TTGGTGGCTCGCTGGCCCTTT |
TUR | 93,955,251 | 93,955,271 | CGACACCAGTCACGTTACCTC |
TDF | 93,950,497 | 93,950,518 | AGCTGTCTCTTTAGTCCCATCC |
TDP | 93,950,456 | 93,950,480 | AATGGTTTACTATTTGCCTTACTGA |
TDR | 93,950,394 | 93,950,415 | GACCTTAGGACTGACACAGAAC |
PCR Primers
Primer | Sequence |
SU | GGCTGGTGGTCGTTCTATTC |
SD | GCTGGGAGTACCTTAGCTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 125 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13672B-G2 | VGB6 | C57BL/6NTac | |
13672A-H12 | VGB6 | C57BL/6NTac | |