| Gene | Ptpmt1 |
| Chromosome | 2 |
| Deletion Start | 90,917,983 |
| Deletion End | 90,911,085 |
| Deletion Size | 6,899 |
| Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
| Primer | Start | End | Sequence |
| TUF | | | AGTTGCCTTCTCAAGTTCTGTG |
| TUP | | | TGGGTCAAGCTCAAATGGCTGCA |
| TUR | | | TCAGCTTCAGCGTCTTTCCAC |
| TDF | | | TGGGACCAAACTCTTGGCTATG |
| TDP | | | TCAGGCTTGGCAGCAAGTACCTGTA |
| TDR | | | GCTGGCAAGGTAGCTCAGTG |
PCR Primers
| Primer | Sequence |
| SU | ACCTAGGTTCAAGTTCAGGTT |
| SD | CAAGCACTTTGCCAAGTCATAC |
| LacInR | TTGACTGTAGCGGCTGATGTTG |
| LacInf | GGTAAACTGGCTCGGATTAGGG |
| NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
| NeoInF | TTCGGCTATGACTGGGCACAACAG |
| LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
| NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
| Forward Primer | Reverse Primer | Length | WT | HET | KO |
| SU | LacZRev | bp | - | + | + |
| NeoFwd | SD | bp | - | + | + |
| LacInf | LacInR | 210 bp | - | + | + |
| NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
| Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
| 13748A-D7 | VGB6 | C57BL/6NTac | |
| 13748A-G6 | VGB6 | C57BL/6NTac | |
| 13748A-D2 | VGB6 | C57BL/6NTac | |
| 13748A-B6 | VGB6 | C57BL/6NTac | |
