Gene | Rbm8a |
Chromosome | 3 |
Deletion Start | 96,629,965 |
Deletion End | 96,631,772 |
Deletion Size | 1,808 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 96,630,511 | 96,630,529 | CGACAGTGTGGAGCAGGAC |
TUP | 96,630,532 | 96,630,554 | CGATGAACCTGGACCACAGCGCT |
TUR | 96,630,570 | 96,630,589 | TGCACACAGACTCCCCATAG |
TDF | 96,631,512 | 96,631,530 | GCAGCCAATCAGTGTGGAC |
TDP | 96,631,531 | 96,631,554 | TGGTGTTTTGTTCGTGGACCACCA |
TDR | 96,631,559 | 96,631,581 | CCCTTCATCTTACCTCCTCTTGC |
PCR Primers
Primer | Sequence |
SU | GGCTGTAGAACTTCCGAAACC |
SD | AGGCTAAGCATCACAAAGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 79 bp | + | + | - |
TDF | TDR | 70 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13764A-D5 | VGB6 | C57BL/6NTac | |
13764A-A12 | VGB6 | C57BL/6NTac | |