Gene | Tspan1 |
Chromosome | 4 |
Deletion Start | 116,167,061 |
Deletion End | 116,162,885 |
Deletion Size | 4,177 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 116,166,932 | 116,166,950 | AACAGAGGCCAGGCTGGAG |
TUP | 116,166,903 | 116,166,929 | TGGGAAACTAGGTACCCAGACTCTGCC |
TUR | 116,166,845 | 116,166,868 | TCAGGAATCAGCATTTGGGAAGAC |
TDF | 116,163,372 | 116,163,395 | CCAAGGGTTGTTTCAAAGAGATTC |
TDP | 116,163,339 | 116,163,366 | AGAATCAGAGCCAATGCAGTCACTGTGG |
TDR | 116,163,317 | 116,163,335 | GCAACTCCAACTGCCACAC |
PCR Primers
Primer | Sequence |
SU | GCAGTTTCCTGGAGCTGTTC |
SD | TTAGGCAATCAGGACCCATC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 106 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13925A-A10 | VGB6 | C57BL/6NTac | |
13925A-B10 | VGB6 | C57BL/6NTac | |
13925A-C8 | VGB6 | C57BL/6NTac | |
13925A-F7 | VGB6 | C57BL/6NTac | |
13925A-F5 | VGB6 | C57BL/6NTac | |
13925A-D2 | VGB6 | C57BL/6NTac | |