Gene | Ptpn6 |
Chromosome | 6 |
Deletion Start | 124,732,950 |
Deletion End | 124,721,031 |
Deletion Size | 11,920 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 124,732,663 | 124,732,681 | GGTTCCCTGGGTTGTGTTG |
TUP | 124,732,626 | 124,732,654 | TGATACATTTCTTCCCTTCTGTCCCTGCC |
TUR | 124,732,579 | 124,732,601 | AGGCATGGAGTAGACATAGACAG |
TDF | 124,721,640 | 124,721,660 | AGGGCCAGGAGTCGGAGTATG |
TDP | 124,721,611 | 124,721,635 | TATCACGTACCCTCCCGCTGTGAGG |
TDR | 124,721,580 | 124,721,600 | AGGAAGTACGCGAGGCTTTGG |
PCR Primers
Primer | Sequence |
SU | TGACTCTTGACCTGCCACAC |
SD | TTGGAGGCAATACACAGTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 103 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14114A-A9 | VGB6 | C57BL/6NTac | |
14114A-B1 | VGB6 | C57BL/6NTac | |
14114A-C1 | VGB6 | C57BL/6NTac | |
14114A-E9 | VGB6 | C57BL/6NTac | |