Gene | Rab11fip1 |
Chromosome | 8 |
Deletion Start | 27,174,582 |
Deletion End | 27,143,107 |
Deletion Size | 31,476 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 27,173,705 | 27,173,724 | TGCTGATTCTCATGCCCATC |
TUP | 27,173,667 | 27,173,695 | CCCTCGGAATGAACGCTAGAACAGTTTGT |
TUR | 27,173,638 | 27,173,661 | CGACCACTAATTCAGATCCCAGAC |
TDF | 27,143,317 | 27,143,339 | TGATCCAGCTAGTCCTCAAACAG |
TDP | 27,143,282 | 27,143,309 | CCATCAGCAAGAAGGAGTTTCAGGTGCG |
TDR | 27,143,253 | 27,143,274 | GCAGGTTGTCGATGTAGTCCTC |
PCR Primers
Primer | Sequence |
SU | GGGACCAGAGCAGGAGAAG |
SD | CAAGAGAGCGGGTGAAACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 87 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14117A-D1 | VGB6 | C57BL/6NTac | |
14117A-E5 | VGB6 | C57BL/6NTac | |
14117A-F11 | VGB6 | C57BL/6NTac | |