14289   Bop1     Status: ES cell colonies screened / QC positives

GeneBop1
Chromosome15
Deletion Start76,477,218
Deletion End76,466,777
Deletion Size10,442
Genome Build38
MGI IDMGI:1334460
NCBI Gene ID12181
BAC ID440E11
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 15

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF76,477,03176,477,050GCAGCGTGTAGTGTCGTGTG
TUP76,477,00776,477,028TCGCCTAGAGCCTGATCGTCCA
TUR76,476,95776,476,976CCTCGGCGCAAGTAATGTTC
TDF76,467,50676,467,529TGTTCTGAATGTGGTTCTTAGTGG
TDP76,467,47876,467,504TCTAGGTGTTCCTTACGACAGAGGCCA
TDR76,467,43676,467,456GGTAAGTGGGCAGTGCTATGG

PCR Primers

PrimerSequence
SUTGAGCTAGTGTCGTCGCTG
SDGCTTCAGTCATCTGTCTCAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR94 bp++-
TDFTDR94 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
14289A-A8VGB6C57BL/6NTac
14289A-B4VGB6C57BL/6NTac
14289A-E2VGB6C57BL/6NTac
14289A-E3VGB6C57BL/6NTac
14289A-F7VGB6C57BL/6NTac
14289A-H7VGB6C57BL/6NTac