Gene | Bop1 |
Chromosome | 15 |
Deletion Start | 76,477,218 |
Deletion End | 76,466,777 |
Deletion Size | 10,442 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 76,477,031 | 76,477,050 | GCAGCGTGTAGTGTCGTGTG |
TUP | 76,477,007 | 76,477,028 | TCGCCTAGAGCCTGATCGTCCA |
TUR | 76,476,957 | 76,476,976 | CCTCGGCGCAAGTAATGTTC |
TDF | 76,467,506 | 76,467,529 | TGTTCTGAATGTGGTTCTTAGTGG |
TDP | 76,467,478 | 76,467,504 | TCTAGGTGTTCCTTACGACAGAGGCCA |
TDR | 76,467,436 | 76,467,456 | GGTAAGTGGGCAGTGCTATGG |
PCR Primers
Primer | Sequence |
SU | TGAGCTAGTGTCGTCGCTG |
SD | GCTTCAGTCATCTGTCTCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14289A-A8 | VGB6 | C57BL/6NTac | |
14289A-B4 | VGB6 | C57BL/6NTac | |
14289A-E2 | VGB6 | C57BL/6NTac | |
14289A-E3 | VGB6 | C57BL/6NTac | |
14289A-F7 | VGB6 | C57BL/6NTac | |
14289A-H7 | VGB6 | C57BL/6NTac | |