Gene | Trpm4 |
Chromosome | 7 |
Deletion Start | 45,333,707 |
Deletion End | 45,303,664 |
Deletion Size | 30,044 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 45,332,896 | 45,332,913 | TAGGGCTGCGCTTGTCAC |
TUP | 45,332,871 | 45,332,895 | CTGGGCACAGAACAGCTCCTCCCTT |
TUR | 45,332,810 | 45,332,831 | GATGGGCAGAGTTCCAGAAATG |
TDF | 45,304,057 | 45,304,077 | GCCAAAGAAACGCACCAGAAG |
TDP | 45,304,028 | 45,304,051 | AACAACGCTGTTCGCTGGACCACA |
TDR | 45,303,985 | 45,304,008 | GGAGTCCTGAACTGTTTGCTGAAG |
PCR Primers
Primer | Sequence |
SU | CTCTGCTTCCTTCGTTCCTC |
SD | CAACATCACACACCTGCTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14308A-B10 | VGB6 | C57BL/6NTac | |
14308A-C2 | VGB6 | C57BL/6NTac | |
14308A-G9 | VGB6 | C57BL/6NTac | |
14308A-H7 | VGB6 | C57BL/6NTac | |